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Model development
Personalized signaling models
Pasmopy modules reference
Pasmopy
Index
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Index
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A
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B
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C
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D
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G
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I
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M
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P
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R
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S
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T
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W
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_drug_response_data (pasmopy.validation.CancerCellLineEncyclopedia attribute)
A
add_to_params() (pasmopy.preprocessing.weighting_factors.WeightingFactors method)
as_initial_conditions() (pasmopy.individualization.Individualization method)
as_reaction_rate() (pasmopy.individualization.Individualization method)
B
biomass_kws (pasmopy.patient_model.PatientModelAnalyses attribute)
(pasmopy.patient_model.PatientModelSimulations attribute)
C
CancerCellLineEncyclopedia (class in pasmopy.validation)
D
drug_alias (pasmopy.validation.CancerCellLineEncyclopedia attribute)
G
gene_expression (pasmopy.individualization.Individualization attribute)
(pasmopy.preprocessing.weighting_factors.WeightingFactors attribute)
I
indentation (pasmopy.preprocessing.weighting_factors.WeightingFactors attribute)
Individualization (class in pasmopy.individualization)
M
model (pasmopy.preprocessing.weighting_factors.WeightingFactors attribute)
P
parameters (pasmopy.individualization.Individualization attribute)
PatientModelAnalyses (class in pasmopy.patient_model)
PatientModelSimulations (class in pasmopy.patient_model)
prefix (pasmopy.individualization.Individualization attribute)
(pasmopy.preprocessing.weighting_factors.WeightingFactors attribute)
R
read_csv_kws (pasmopy.individualization.Individualization attribute)
response_characteristics (pasmopy.patient_model.PatientModelSimulations attribute)
run() (pasmopy.patient_model.PatientModelAnalyses method)
(pasmopy.patient_model.PatientModelSimulations method)
S
save_activity_area() (pasmopy.validation.CancerCellLineEncyclopedia method)
save_dose_response_curve() (pasmopy.validation.CancerCellLineEncyclopedia method)
set_search_bounds() (pasmopy.preprocessing.weighting_factors.WeightingFactors method)
species (pasmopy.individualization.Individualization attribute)
subtyping() (pasmopy.patient_model.PatientModelSimulations method)
T
transcriptomic_data (pasmopy.individualization.Individualization attribute)
W
weighting_factors (pasmopy.preprocessing.weighting_factors.WeightingFactors attribute)
WeightingFactors (class in pasmopy.preprocessing.weighting_factors)
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