Pasmopy – Patient-Specific Modeling in Python
Pasmopy is an open-source Python package for the development of signaling pathway models that are individualized to patient-specific data. It includes modules for model construction, parameterization, in silico patient stratification, and more.
Source code: https://github.com/pasmopy/pasmopy
The open access publication describing Pasmopy is available here:
Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. iScience 25, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944